EXPT415.txt
Summary
FIRE has discovered 19 motifs from the query data, consisting of 15 from DNA and 4 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
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- Motif maps
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Motif Location Position
biasOrientation
biasMaps [ACG]A[ACG][CT]GCGC[CGT] 5' Y PDF PNG EPS .[AG]A[GT]CGAT[AT] 5' PDF PNG EPS .CG[ACG]GAC[CG]. 5' PDF PNG EPS .[ACU][CGU]C[CU]CCC. 3'UTR Y Y PDF PNG EPS .CGA[AG]CG.. 5' PDF PNG EPS .T[ACT]TTCGC[ACG] 5' PDF PNG EPS [AG][ACG][AT][AT]TCGC[AG] 5' PDF PNG EPS [CT]TGCG[CGT][AC]C. 5' PDF PNG EPS UA[ACU]U[CU]AU[CGU][AGU] 3'UTR Y PDF PNG EPS TC[CG]C.C[GT]C[CGT] 5' Y PDF PNG EPS [ACT]ACCTA[AC][CGT]. 5' Y PDF PNG EPS [AGT][CT]CGCT[ACG][AC][ACG] 5' Y PDF PNG EPS .[AG]CC[AGT][GT]CG[ACG] 5' Y PDF PNG EPS .AAUAAA[AC]. 3'UTR Y PDF PNG EPS .[AU][ACU]UCA[CU]C. 3'UTR Y PDF PNG EPS [ACG][AG]G[AC]G[AT]CG. 5' PDF PNG EPS [AT][AG]CTA[GT]A[CG][ACT] 5' PDF PNG EPS .T[ACG]TCGAA[CGT] 5' PDF PNG EPS .AACTTTG. 5' PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.