EXPT426.txt
Summary
FIRE has discovered 15 motifs from the query data, consisting of 13 from DNA and 2 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
-
- Motif maps
-
Motif Location Position
biasOrientation
biasMaps [ACT][AG][AGT][CT]GCGC[CGT] 5' Y PDF PNG EPS .[AG]ATCGAT[AT] 5' PDF PNG EPS [GT]CGAGACC[ACT] 5' PDF PNG EPS [CGU]UAU[CU][GU][AU]U[CU] 3'UTR Y PDF PNG EPS [ACG]TCGA[AC]G[ACG][AGT] 5' Y PDF PNG EPS [CGU]C[ACU]CC[CGU][CU][AGU][CU] 3'UTR Y PDF PNG EPS [AGT][CT]TTCGC[AG][AGT] 5' PDF PNG EPS [AG][AC]G[AT][AC]CGC[AGT] 5' PDF PNG EPS .[AG][ACG]ATCGC. 5' PDF PNG EPS [GT][AC]CG[CT][AG]GA[ACG] 5' Y PDF PNG EPS .[AT][CG]GC[CT]GC. 5' Y PDF PNG EPS .[AG]TTCG[AC]G. 5' PDF PNG EPS [AGT][CT]AC[ACG]TA[AC][GT] 5' PDF PNG EPS [AT]AC[CT].CC[CT][AT] 5' Y PDF PNG EPS .CTA[CG][AGT]TC[ACT] 5' PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.