EXPT430.txt
Summary
FIRE has discovered 17 motifs from the query data, consisting of 14 from DNA and 3 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
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- Motif maps
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Motif Location Position
biasOrientation
biasMaps [ACT][ACG]CGTGA[AC][AC] 5' Y PDF PNG EPS [ACG][CT]GCG[CT].C[CGT] 5' PDF PNG EPS [AGT]ATCGA[CT]A. 5' PDF PNG EPS [ACG]AA[GU]AAA[GU][AGU] 3'UTR Y Y PDF PNG EPS [AGT]CGAGACC. 5' PDF PNG EPS [CU][ACU][ACU]UC[ACU]CC[ACG] 3'UTR Y PDF PNG EPS .ACGT[CG]G[AC]. 5' Y Y PDF PNG EPS UU[ACG]UU[CG][CU][GU][CGU] 3'UTR Y PDF PNG EPS [ACT]TGCCT[AG]CC 5' PDF PNG EPS [ACG][ACT]TTCG[CT]G. 5' PDF PNG EPS GTACGC.A[AT] 5' PDF PNG EPS [CT]C.TA[GT]CA[AGT] 5' PDF PNG EPS [CGT]ACCG[CT]AG. 5' PDF PNG EPS .ATCGC[GT][ACG]. 5' PDF PNG EPS .A[ACG]CGCTG. 5' PDF PNG EPS [AC]AAAAGTT[ACT] 5' Y PDF PNG EPS [ACT]ACGA[ACG]G[AC]. 5' PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.