EXPT431.txt
Summary
FIRE has discovered 15 motifs from the query data, consisting of 11 from DNA and 4 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
-
- Motif maps
-
Motif Location Position
biasOrientation
biasMaps [ACT][ACG]CGTGA[AC][AC] 5' Y Y PDF PNG EPS [ACG][AG]A[GT]CGAT[AGT] 5' PDF PNG EPS .[AG]A[CT]GCGC. 5' Y PDF PNG EPS .[CG]AAUAAA. 3'UTR Y Y PDF PNG EPS [AGT]CG[AC]G[AG][AC]C. 5' PDF PNG EPS .[CU][AGU].U[AC]CC[CU] 3'UTR Y PDF PNG EPS .ACGTG[GT]A. 5' Y PDF PNG EPS .CGA[AG]GAA. 5' Y PDF PNG EPS [CGT]CTTA[CT]CA. 5' Y PDF PNG EPS [CGT]CG[CT]TC[CG]A[ACT] 5' PDF PNG EPS [ACT][ACT][CT]GTCGA[GT] 5' PDF PNG EPS [AG]AG.[AG]CGC[ACT] 5' PDF PNG EPS [CGT]CG[ACG]TGT[CGT][CG] 5' PDF PNG EPS [CGU]UCAU[GU][AGU]U. 3'UTR Y PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.