EXPT455.txt
Summary
FIRE has discovered 16 motifs from the query data, consisting of 9 from DNA and 7 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
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- Motif maps
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Motif Location Position
biasOrientation
biasMaps [CGU][CGU][AGU][CU]CCC[CG]. 3'UTR Y PDF PNG EPS .CG[AC]GAC[CG]. 5' PDF PNG EPS [CGU][AC]U[CU]UAU[ACU][CGU] 3'UTR Y PDF PNG EPS .[CT]T[GT]CGC[AG][AG] 5' PDF PNG EPS .[AG]GAGCG[AC][AG] 5' PDF PNG EPS .[ACU]UC.[CU]UCU 3'UTR Y PDF PNG EPS [CU]U.CUU[AU]U[CGU] 3'UTR Y PDF PNG EPS .AATCGAT. 5' PDF PNG EPS [CGT][GT]GCG[CT][AG]C. 5' Y PDF PNG EPS [CU][CG]U[AU][CU][CU]AU. 3'UTR Y PDF PNG EPS [ACG][CT]CGTTGC. 5' PDF PNG EPS .TCGCT[GT][AC]. 5' PDF PNG EPS [ACU][CU][AG]C[CU][AGU]UC[ACU] 3'UTR Y PDF PNG EPS .CGA[AC]GAA. 5' PDF PNG EPS .AAAA[ACU]UG[AGU] 3'UTR Y PDF PNG EPS [ACT][AC]TA[GT]G[CT]A[CT] 5' PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.