EXPT463.txt
Summary
FIRE has discovered 17 motifs from the query data, consisting of 11 from DNA and 6 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
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- Motif maps
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Motif Location Position
biasOrientation
biasMaps [ACU][CU][CU][CGU]CCC[CU]. 3'UTR Y PDF PNG EPS [AGT][ACT]G[AC]GAC[CG][CG] 5' PDF PNG EPS [CGT][AC]C[CT]CTCT[ACT] 5' Y PDF PNG EPS [ACT]CTTC[CGT]TC[CGT] 5' PDF PNG EPS [CGT]C[ACT][GT]CTCG. 5' Y Y PDF PNG EPS [CGU]UC[AG]UU[CGU]U[CU] 3'UTR Y PDF PNG EPS .AGAGAAA. 5' PDF PNG EPS .CATC[AG]TC. 5' Y PDF PNG EPS [ACT]G[AG][AG][GT]TCC[AT] 5' PDF PNG EPS [AGU][AU]CG[CG]C.[AG][AC] 3'UTR Y PDF PNG EPS .CT[CG][CG]ACG[AGT] 5' Y Y PDF PNG EPS [ACU]A[CU]GGGU.[GU] 3'UTR Y PDF PNG EPS .[GT]CG[AG][AC]TC[CGT] 5' PDF PNG EPS .[AG]C[AG]ACGA[AGT] 5' PDF PNG EPS .[CT]CTTATC[AGT] 5' PDF PNG EPS .AUUU[AC]UU[ACU] 3'UTR Y PDF PNG EPS .[AG][AG]UAA[AC][CG][CGU] 3'UTR Y PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.