EXPT482.txt
Summary
FIRE has discovered 8 motifs from the query data, consisting of 4 from DNA and 4 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
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- Motif maps
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Motif Location Position
biasOrientation
biasMaps .[GU][CU][CU]C[CU]CU[CGU] 3'UTR Y PDF PNG EPS [ACG]G[ACG]GACG[CG]. 5' PDF PNG EPS [CU][AU][AC]U[CU][CU]AU[GU] 3'UTR Y PDF PNG EPS [ACU]CCCGUU[GU][CGU] 3'UTR Y PDF PNG EPS [ACU]UC.C[ACG]GU[CU] 3'UTR Y PDF PNG EPS [ACT]CGC[AG][AC][CT]C. 5' Y PDF PNG EPS TATA[AC]A[AG]G. 5' Y Y PDF PNG EPS .AAAGAGA. 5' PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.