FIRE

EXPT93.txt

Summary

FIRE has discovered 11 motifs from the query data, consisting of 11 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.C[CT]TATCA.	5'	Y		PDF	PNG	EPS
.CGA[AGT][CG][AG]AT	5'			PDF	PNG	EPS
[ACG]AA[GT]CGAT.	5'			PDF	PNG	EPS
[AG]A[ACT]CGCG[AC].	5'			PDF	PNG	EPS
[AGT]CGAGACC.	5'			PDF	PNG	EPS
[AT][GT][AGT]CGCGC[CGT]	5'			PDF	PNG	EPS
[AGT][AT]GATAAC[GT]	5'			PDF	PNG	EPS
.[AC]G[AC]T[CT]CG[AGT]	5'			PDF	PNG	EPS
[AGT][CT][AT]CGCAA.	5'			PDF	PNG	EPS
[AGT][AGT]TGGTCA.	5'			PDF	PNG	EPS
[AT]ACACA[CG]T[AGT]	5'			PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.