FIRE

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Arr_100_NitrogenDepletion8h.txt

Summary

FIRE has discovered 6 motifs from the query data, consisting of 6 from DNA and 0 from RNA.

DNA results

Figures
FIRE p-value matrix PDF PNG EPS
FIRE density matrix PDF PNG EPS
FIRE motif interaction matrix PDF PNG EPS
Motif maps
Motif Location    Position   
bias
Orientation
bias
Maps
.C[AT]CATC[GT]C5'Y PDF PNG EPS
[CT]CC[AG]T[AG]CA[CT]5'YY PDF PNG EPS
.[AC]AGGGG[CGT].5' PDF PNG EPS
[AGT][AGT]TA[AG]GGG.5'Y PDF PNG EPS
.[CGT]CTTATC[AGT]5'Y PDF PNG EPS
AA[ACG]TTTTC[AC]5'Y PDF PNG EPS
Additional information
Best GO enrichments for motifs
All GO enrichments for motifs
All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.