FIRE

Arr_101_NitrogenDepletion12h.txt

Summary

FIRE has discovered 5 motifs from the query data, consisting of 5 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.CCCCT[AGT][AGT][ACT]	5'	Y		PDF	PNG	EPS
A[AT][GT]TTTCA[CGT]	5'	Y		PDF	PNG	EPS
[ACT]C[ACG][ACG]TACA[AGT]	5'		Y	PDF	PNG	EPS
.C[ACG]CCCC[ACG][CGT]	5'		Y	PDF	PNG	EPS
[ACG][ACT]GAT[AT][AC]G[CGT]	5'			PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.