Arr_112_diauxicshifttimecourse205h.txt
Summary
FIRE has discovered 10 motifs from the query data, consisting of 6 from DNA and 4 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
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- Motif maps
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Motif Location Position
biasOrientation
biasMaps .CCCC[GT].[AG]. 5' Y PDF PNG EPS [CGT]CTCATC[GT][AC] 5' Y PDF PNG EPS [CU]UGUA[ACU][AU].U 3'UTR Y PDF PNG EPS [CT]CC[CT][GT]TAA[AT] 5' PDF PNG EPS [ACG]AATTT[GT]C[AG] 5' Y Y PDF PNG EPS [CGT]CC[ACG][CT][ACT]CC[CGT] 5' PDF PNG EPS [AU]UUUA[GU]UU[ACU] 3'UTR Y Y PDF PNG EPS [CGT][AC][ACG]CGG[AC]G. 5' PDF PNG EPS [ACG]A[CG]A[AG][CG]UG[ACU] 3'UTR Y PDF PNG EPS .ACUUCC[CU][ACU] 3'UTR Y PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.