Arr_126_YPDstationaryphase12hypd1.txt
Summary
FIRE has discovered 9 motifs from the query data, consisting of 7 from DNA and 2 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
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- Motif maps
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Motif Location Position
biasOrientation
biasMaps GAAAA[AT]TTT 5' Y PDF PNG EPS .CCCC[CT][CT][AGT][ACT] 5' Y PDF PNG EPS [CT]CC[AG]TACA[CT] 5' Y Y PDF PNG EPS .[CT][AC]GGGG[ACT]. 5' PDF PNG EPS .[AU][AGU]AUAGA. 3'UTR Y PDF PNG EPS [ACT][AG]ACGCG[AT][ACG] 5' PDF PNG EPS [CT][CG]CCT[AT]AA[AGT] 5' PDF PNG EPS [ACU][GU]AUAUUC. 3'UTR Y PDF PNG EPS [AG]AAAA[AGT]AT[CT] 5' Y PDF PNG EPS
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- Combined motif maps for co-localizing motifs
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Motif 1 Motif 2 Location Maps
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.