Arr_127_YPDstationaryphase1dypd1.txt
Summary
FIRE has discovered 10 motifs from the query data, consisting of 7 from DNA and 3 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
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- Motif maps
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Motif Location Position
biasOrientation
biasMaps AAAA[AT]TTT[CT] 5' Y PDF PNG EPS .CCCC[GT].[AG]. 5' Y PDF PNG EPS [CGT]CCCTT[AT][AT]. 5' Y PDF PNG EPS [ACG]CCCC[GT].[CT][CT] 5' Y PDF PNG EPS [CT]CC[AG]T[AG]CA[CT] 5' Y Y PDF PNG EPS [ACU]UGUA[ACU]A[ACU]U 3'UTR Y Y PDF PNG EPS .CGCG[AT]AA. 5' PDF PNG EPS .UAUA[GU]UC[AU] 3'UTR Y PDF PNG EPS [AU]UUU[AG][GU]UU[AGU] 3'UTR Y PDF PNG EPS [ACG]GTATCAC[AGT] 5' PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.