Arr_128_YPDstationaryphase2dypd1.txt
Summary
FIRE has discovered 7 motifs from the query data, consisting of 5 from DNA and 2 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
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- Motif maps
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Motif Location Position
biasOrientation
biasMaps AAAA[AT]TTT[CT] 5' Y PDF PNG EPS .CCCCT[AGT][AGT][ACT] 5' Y PDF PNG EPS .[GT]AAGGG.[CGT] 5' Y Y PDF PNG EPS [CT]CC[AG]TACA[CT] 5' Y Y PDF PNG EPS [ACU][CU][CGU]U[AU]UAAU 3'UTR Y Y PDF PNG EPS .[ACG][CT]A[CT]CCC[AGT] 5' PDF PNG EPS [AGU]UUAU[GU]UU[AU] 3'UTR Y PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.