FIRE

Arr_138_DBYyap137degreeheat20minredo.txt

Summary

FIRE has discovered 8 motifs from the query data, consisting of 8 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
[ACG]CCCCT.[AGT].	5'	Y		PDF	PNG	EPS
[CGT]CTCATCG[ACG]	5'	Y		PDF	PNG	EPS
[CT]CC[AG]TACA[CT]	5'	Y	Y	PDF	PNG	EPS
[AG]AATT[AT]TC[AGT]	5'			PDF	PNG	EPS
[ACT][CG]CCGC[CG].[CGT]	5'			PDF	PNG	EPS
.CCCTTA[AT].	5'			PDF	PNG	EPS
[AGT][CT]GCCAC[CT][CG]	5'	Y		PDF	PNG	EPS
[AGT]CGCGAAA[ACG]	5'			PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.