FIRE

Arr_21_heatshock17to3720minutes.txt

Summary

FIRE has discovered 6 motifs from the query data, consisting of 6 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
[CGT]CTCATC[GT]C	5'	Y		PDF	PNG	EPS
[ACT][ACT]AGGGG..	5'	Y		PDF	PNG	EPS
..CCCC[CGT]C.	5'			PDF	PNG	EPS
[CT]CC[AG][CT]ACA[CT]	5'	Y	Y	PDF	PNG	EPS
.AATTTTC.	5'	Y	Y	PDF	PNG	EPS
[AT].[ACG]AGGGA[GT]	5'			PDF	PNG	EPS

Combined motif maps for co-localizing motifs

Motif 1	Motif 2	Location	Maps
[CGT]CTCATC[GT]C	.AATTTTC.	5'	PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.