FIRE

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Arr_24_heatshock29to3720minutes.txt

Summary

FIRE has discovered 6 motifs from the query data, consisting of 6 from DNA and 0 from RNA.

DNA results

Figures
FIRE p-value matrix PDF PNG EPS
FIRE density matrix PDF PNG EPS
FIRE motif interaction matrix PDF PNG EPS
Motif maps
Motif Location    Position   
bias
Orientation
bias
Maps
.CTCATC[GT]C5'Y PDF PNG EPS
[ACG]CCCCT[AGT]..5'Y PDF PNG EPS
[AG][CT]CC[AG]TACA5'Y PDF PNG EPS
.CCCT[GT]A[ACT].5' PDF PNG EPS
[ACT]AATTTTC.5'Y PDF PNG EPS
..CCCC[GT]C.5'YY PDF PNG EPS
Combined motif maps for co-localizing motifs
Motif 1 Motif 2   Location   Maps
.CTCATC[GT]C[ACT]AATTTTC.5' PDF PNG EPS
[ACG]CCCCT[AGT]....CCCC[GT]C.5' PDF PNG EPS
Additional information
Best GO enrichments for motifs
All GO enrichments for motifs
All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.