FIRE

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Arr_4_HeatShock20minuteshs1.txt

Summary

FIRE has discovered 6 motifs from the query data, consisting of 6 from DNA and 0 from RNA.

DNA results

Figures
FIRE p-value matrix PDF PNG EPS
FIRE density matrix PDF PNG EPS
FIRE motif interaction matrix PDF PNG EPS
Motif maps
Motif Location    Position   
bias
Orientation
bias
Maps
[CGT]CTCATC[GT]C5'Y PDF PNG EPS
[ACG]CCCCT...5'Y PDF PNG EPS
.[AT]T[AC]AGGG.5'Y PDF PNG EPS
[ACT][AGT][CG]CGCC[CG].5' PDF PNG EPS
TC[CT]GTACA[CGT]5'Y PDF PNG EPS
.[AG]GGGAG[ACT].5'Y PDF PNG EPS
Additional information
Best GO enrichments for motifs
All GO enrichments for motifs
All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.