FIRE

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Arr_5_HeatShock30minuteshs1.txt

Summary

FIRE has discovered 5 motifs from the query data, consisting of 5 from DNA and 0 from RNA.

DNA results

Figures
FIRE p-value matrix PDF PNG EPS
FIRE density matrix PDF PNG EPS
FIRE motif interaction matrix PDF PNG EPS
Motif maps
Motif Location    Position   
bias
Orientation
bias
Maps
[CGT]CTCATC[GT]C5'Y PDF PNG EPS
[ACG]CCCC[CT][CGT][AGT].5'Y PDF PNG EPS
.CCC[CT]TA[AT][AGT]5'Y PDF PNG EPS
[AT]AATTTTC.5'Y PDF PNG EPS
[ACG][ACG]GGGAG[CG][ACG]5'Y PDF PNG EPS
Combined motif maps for co-localizing motifs
Motif 1 Motif 2   Location   Maps
Additional information
Best GO enrichments for motifs
All GO enrichments for motifs
All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.