FIRE

Arr_74_15mMdiamide40min.txt

Summary

FIRE has discovered 8 motifs from the query data, consisting of 8 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.CTCATC[GT]C	5'	Y		PDF	PNG	EPS
.CCCCT[AGT][AT].	5'	Y		PDF	PNG	EPS
[CT]CC[AG]TACA[CT]	5'	Y	Y	PDF	PNG	EPS
.T[ACT]GCC[AC]C[ACT]	5'	Y		PDF	PNG	EPS
[AGT][ACT]G[ACG]G[CG]GG.	5'			PDF	PNG	EPS
[ACT]AATTTTC.	5'	Y		PDF	PNG	EPS
.C[AC][AG]GGGG[CGT]	5'			PDF	PNG	EPS
.A[AT]AAAATT	5'			PDF	PNG	EPS

Combined motif maps for co-localizing motifs

Motif 1	Motif 2	Location	Maps
.CTCATC[GT]C	[ACT]AATTTTC.	5'	PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.