FIRE

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Arr_97_NitrogenDepletion1h.txt

Summary

FIRE has discovered 4 motifs from the query data, consisting of 4 from DNA and 0 from RNA.

DNA results

Figures
FIRE p-value matrix PDF PNG EPS
FIRE density matrix PDF PNG EPS
FIRE motif interaction matrix PDF PNG EPS
Motif maps
Motif Location    Position   
bias
Orientation
bias
Maps
[CGT]CTCATC[CGT]C5'Y PDF PNG EPS
[CT]CC[AGT]TACA[CT]5'YY PDF PNG EPS
[AG]TGA[CG]TCA.5' PDF PNG EPS
[ACG][AT]CGTGAC[ACT]5' PDF PNG EPS
Additional information
Best GO enrichments for motifs
All GO enrichments for motifs
All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.