Clustered stress microarray dataset (Gasch et al, 2000), analyzed using 6-mer seeds
Summary
FIRE has discovered 24 motifs from the query data, consisting of 16 from DNA and 8 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
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- Motif maps
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Motif Location Position
biasOrientation
biasMaps [CGT]CTCATC[GT] 5' Y PDF PNG EPS UGUA[AC]AUA 3'UTR Y Y PDF PNG EPS .A[AG]GGGG. 5' Y PDF PNG EPS .AAATTT. 5' Y PDF PNG EPS [CT]CC[AG]TACA 5' Y Y PDF PNG EPS [CT]GCC[AG]CC[CGT] 5' Y PDF PNG EPS [ACT][CT][AC]GGGG. 5' Y PDF PNG EPS TTTTTCA. 5' Y PDF PNG EPS [ACT][AG]ACGCG[AT] 5' PDF PNG EPS [ACU]UGUAUA[ACU] 3'UTR Y Y PDF PNG EPS [AG]CCAAT[CG][AG] 5' Y Y PDF PNG EPS [CGT]CG[CT]G[CG]C[CGT] 5' PDF PNG EPS .C[CT]C[CG]GC. 5' Y PDF PNG EPS [ACG]CG[CG][AG]C[GT][ACG] 5' PDF PNG EPS .UAUAAU[ACU] 3'UTR Y PDF PNG EPS [ACG][CG]G[CG][AT]CC[CGT] 5' Y PDF PNG EPS [ACG]C[AU]C[AG][CGU].C 3'UTR Y PDF PNG EPS TCACG[ACT]G[CGT] 5' PDF PNG EPS .[CT]CTCG[AG][AG] 5' Y Y PDF PNG EPS .[GU]AUAGA. 3'UTR Y Y PDF PNG EPS [CGU][CG]C[CG][CU][GU]G. 3'UTR Y PDF PNG EPS [AU]AUAUUC. 3'UTR Y PDF PNG EPS [CGT][CGT]GGGCC. 5' PDF PNG EPS [ACG][CGU]CGC[ACG][ACG][ACG] 3'UTR Y PDF PNG EPS
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- Combined motif maps for co-localizing motifs
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Motif 1 Motif 2 Location Maps [CGT]CTCATC[GT] .AAATTT. 5' PDF PNG EPS [CGT]CTCATC[GT] TTTTTCA. 5' PDF PNG EPS TTTTTCA. .AAATTT. 5' PDF PNG EPS .A[AG]GGGG. [ACT][CT][AC]GGGG. 5' PDF PNG EPS [AG]CCAAT[CG][AG] [ACG]CG[CG][AG]C[GT][ACG] 5' PDF PNG EPS [AG]CCAAT[CG][AG] [CGT][CGT]GGGCC. 5' PDF PNG EPS [CT]CC[AG]TACA .C[CT]C[CG]GC. 5' PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.