EXPT438.txt
Summary
FIRE has discovered 7 motifs from the query data, consisting of 6 from DNA and 1 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
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- Motif maps
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Motif Location Position
biasOrientation
biasMaps [AC]A[AC][CGT][AG]CGC[AGT] 5' PDF PNG EPS .AATCGAT. 5' PDF PNG EPS [ACG]T[CT]TCGCA[AG] 5' PDF PNG EPS [AGU][CU][CU]CU[CU]C.[CU] 3'UTR Y PDF PNG EPS [AC][GT]CGA[ACG][CG][AC]G 5' PDF PNG EPS [AGT][AG]TA[GT]GTA[CGT] 5' Y PDF PNG EPS [ACT]A[ACG]CG[AC][CT]G[ACG] 5' PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.