EXPT454.txt
Summary
FIRE has discovered 12 motifs from the query data, consisting of 10 from DNA and 2 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
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- Motif maps
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Motif Location Position
biasOrientation
biasMaps [AGT]CG[ACT]G[AG]C[CG][ACG] 5' PDF PNG EPS .[ACU][CU]CCCC.[ACU] 3'UTR Y Y PDF PNG EPS [AC]A[AT]CGAT[AG]. 5' PDF PNG EPS .UUC[CGU]UU[GU][CU] 3'UTR Y PDF PNG EPS .[ACG]ATCG[ACT]G[AC] 5' Y PDF PNG EPS .[AG]GAGCG[ACT][AG] 5' PDF PNG EPS [AGT]AA[AG]CG[AC]G. 5' PDF PNG EPS [ACG]CGA[AC]G[AG]A. 5' PDF PNG EPS [AGT]CCG[ACT][GT][CG]G[ACT] 5' PDF PNG EPS .GACGC[AG][AC][AGT] 5' PDF PNG EPS [ACG][CT]CG[CT]TGC. 5' PDF PNG EPS .A[CT]ATGTA. 5' PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.