Motif Analysis for CeNGEN
Analysis of cis-regulatory elements reveals a rich array of 5’ and 3’ motifs
Supplementary website
“Molecular topography of an entire nervous system”
Seth R Taylor, †Gabriel Santpere, †Alexis Weinreb, †Alec Barrett, †Molly B Reilly, †Chuan Xu, †Erdem Varol, †Panos Oikonomou, Lori Glenwinkel, Rebecca McWhirter, Abigail Poff, Manasa Basavaraju, Ibnul Rafi, Eviatar Yemini, Steven J Cook, Alexander Abrams, Berta Vidal, Cyril Cros, Saeed Tavazoie, Nenad Sestan, Marc Hammarlund, Oliver Hobert, David M Miller
† Equal contributors
For cis-regulatory element related questions, contact us at: {po2194@columbia.edu, seth.r.taylor@vanderbilt.edu, david.miller@vanderbilt.edu, st2744@columbia.edu}
Cell, 2021 July.
Supplementary Data
FIRE Results For Individual Neurons
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FIRE Results For Coexpression Patterns
Relevant to Figure 6 & Figure S7.
Regulatory Paterns of neural transcriptomes
Relevant to Figure 6 & Figure S7.
Z scored Expression Matrix (transcripts vs neurons)
Motif Familes: motif-neuron association for motif familes across neuron types
Relevant to Figure 6 B-C-D & Figure S7 A-D-E-F.
Log P-values Matrix (neurons vs motif familes)
Log Fold Ratio Matrix (neurons vs motif familes)
Motif Names Matrix (neurons vs motif familes)
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Motif Instances per Gene
Relevant to Figure 6 & Figure S7B.
Relevant to Figure 6 & Figure S7.